Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.62□□□□□ -0.23
ABCA1O95477 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
ABCA1O95477 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.62□□□□□ -0.23
ABCA1O95477 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.62□□□□□ -0.23
ABCA1O95477 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 AC245100.3-201ENST00000441281 285 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 AC119751.2-201ENST00000504529 210 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 AL079307.3-201ENST00000556114 283 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 AL589739.1-201ENST00000607720 493 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 AL023806.1-201ENST00000603994 1649 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA1O95477 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 AC087499.5-201ENST00000452760 1342 ntBASIC13.62□□□□□ -0.23
ABCA1O95477 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA1O95477 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA1O95477 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA1O95477 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA1O95477 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA1O95477 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA1O95477 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
ABCA1O95477 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 TPRX2P-201ENST00000535362 881 ntBASIC13.61□□□□□ -0.23
ABCA1O95477 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.61□□□□□ -0.23
ABCA1O95477 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 AC007431.3-201ENST00000623221 587 ntBASIC13.61□□□□□ -0.23
ABCA1O95477 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA1O95477 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.61□□□□□ -0.23
ABCA1O95477 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 AC073439.1-201ENST00000624121 1774 ntBASIC13.61□□□□□ -0.23
ABCA1O95477 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
ABCA1O95477 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 LINC00895-201ENST00000629028 1637 ntBASIC13.61□□□□□ -0.23
ABCA1O95477 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
ABCA1O95477 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
ABCA1O95477 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA1O95477 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA1O95477 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
ABCA1O95477 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 GNAQP1-201ENST00000444815 1067 ntBASIC13.61□□□□□ -0.23
ABCA1O95477 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.61□□□□□ -0.23
ABCA1O95477 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA1O95477 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.61□□□□□ -0.23
ABCA1O95477 AC135586.1-201ENST00000539323 574 ntBASIC13.61□□□□□ -0.23
ABCA1O95477 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA1O95477 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA1O95477 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms