Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
LMX1BO60663 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.3□□□□□ -0.12
LMX1BO60663 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 AC025580.3-201ENST00000617932 1424 ntBASIC14.3□□□□□ -0.12
LMX1BO60663 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
LMX1BO60663 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.3□□□□□ -0.12
LMX1BO60663 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LMX1BO60663 AC005622.1-201ENST00000636801 1703 ntBASIC14.29□□□□□ -0.12
LMX1BO60663 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LMX1BO60663 AP005117.1-202ENST00000581724 1908 ntBASIC14.29□□□□□ -0.12
LMX1BO60663 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
LMX1BO60663 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LMX1BO60663 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.29□□□□□ -0.12
LMX1BO60663 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.29□□□□□ -0.12
LMX1BO60663 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.29□□□□□ -0.12
LMX1BO60663 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.29□□□□□ -0.12
LMX1BO60663 AC004835.2-201ENST00000603762 682 ntBASIC14.29□□□□□ -0.12
LMX1BO60663 AC023141.13-201ENST00000604991 943 ntBASIC14.29□□□□□ -0.12
LMX1BO60663 ACTL9-202ENST00000612068 1252 ntBASIC14.29□□□□□ -0.12
LMX1BO60663 AC093028.1-201ENST00000622998 982 ntBASIC14.29□□□□□ -0.12
LMX1BO60663 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LMX1BO60663 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 AC012569.1-201ENST00000591191 1524 ntBASIC14.29□□□□□ -0.12
LMX1BO60663 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LMX1BO60663 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.29□□□□□ -0.12
LMX1BO60663 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LMX1BO60663 AC103702.1-201ENST00000548801 2630 ntBASIC14.28□□□□□ -0.12
LMX1BO60663 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.28□□□□□ -0.12
LMX1BO60663 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LMX1BO60663 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
LMX1BO60663 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.28□□□□□ -0.12
LMX1BO60663 RHOQP3-201ENST00000437982 621 ntBASIC14.28□□□□□ -0.12
LMX1BO60663 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
LMX1BO60663 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.28□□□□□ -0.12
LMX1BO60663 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.28□□□□□ -0.12
LMX1BO60663 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.28□□□□□ -0.12
LMX1BO60663 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
LMX1BO60663 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
LMX1BO60663 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms