Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.86□□□□□ -0.19
SDCBPO00560 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 AC091167.2-201ENST00000579581 588 ntBASIC13.86□□□□□ -0.19
SDCBPO00560 REXO1L3P-201ENST00000622202 1288 ntBASIC13.86□□□□□ -0.19
SDCBPO00560 MIR600HG-201ENST00000449175 5984 ntBASIC13.86□□□□□ -0.19
SDCBPO00560 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.85□□□□□ -0.19
SDCBPO00560 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SDCBPO00560 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.85□□□□□ -0.19
SDCBPO00560 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.85□□□□□ -0.19
SDCBPO00560 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.85□□□□□ -0.19
SDCBPO00560 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
SDCBPO00560 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.85□□□□□ -0.19
SDCBPO00560 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
SDCBPO00560 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 FAAHP1-202ENST00000446499 1238 ntBASIC13.85□□□□□ -0.19
SDCBPO00560 AC079781.3-201ENST00000449110 356 ntBASIC13.85□□□□□ -0.19
SDCBPO00560 AC018712.1-201ENST00000455767 687 ntBASIC13.85□□□□□ -0.19
SDCBPO00560 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.85□□□□□ -0.19
SDCBPO00560 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 AC008667.4-201ENST00000607370 168 ntBASIC13.85□□□□□ -0.19
SDCBPO00560 TNRC18P2-201ENST00000417666 2714 ntBASIC13.85□□□□□ -0.19
SDCBPO00560 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
SDCBPO00560 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
SDCBPO00560 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 AP002414.3-201ENST00000589352 1468 ntBASIC13.85□□□□□ -0.19
SDCBPO00560 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 AC129492.6-201ENST00000611383 1305 ntBASIC13.85□□□□□ -0.19
SDCBPO00560 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SDCBPO00560 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SDCBPO00560 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 AC069224.1-201ENST00000566372 1715 ntBASIC13.84□□□□□ -0.19
SDCBPO00560 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms