Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 CNN2P10-201ENST00000443067 918 ntBASIC12.31□□□□□ -0.44
COL6A5A8TX70 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 C2orf69P1-201ENST00000563532 1093 ntBASIC12.31□□□□□ -0.44
COL6A5A8TX70 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC12.31□□□□□ -0.44
COL6A5A8TX70 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL6A5A8TX70 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AC138028.4-201ENST00000564984 1845 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 RN7SKP214-201ENST00000364208 315 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AC019193.1-201ENST00000506678 823 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AC092068.3-201ENST00000587894 2016 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 AC007787.1-201ENST00000588095 1583 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AC092171.5-201ENST00000608012 942 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 SERBP1P2-201ENST00000436888 1164 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 PIN4P1-201ENST00000451079 396 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 DNM1P51-201ENST00000558149 522 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL6A5A8TX70 AC004899.1-201ENST00000424687 1714 ntBASIC12.3□□□□□ -0.44
COL6A5A8TX70 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC12.3□□□□□ -0.44
COL6A5A8TX70 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 CRCP-204ENST00000398684 492 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 AL354877.1-201ENST00000424412 413 ntBASIC12.29□□□□□ -0.44
COL6A5A8TX70 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 REEP5-205ENST00000504247 480 ntTSL 5 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 ALG1L13P-202ENST00000519320 584 ntBASIC12.29□□□□□ -0.44
COL6A5A8TX70 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL6A5A8TX70 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
COL6A5A8TX70 AL353770.1-201ENST00000614915 403 ntBASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms