Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBE2D4Q9Y2X8 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
UBE2D4Q9Y2X8 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC16.37■□□□□ 0.21
UBE2D4Q9Y2X8 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
UBE2D4Q9Y2X8 AC004812.2-201ENST00000611079 2094 ntBASIC16.36■□□□□ 0.21
UBE2D4Q9Y2X8 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
UBE2D4Q9Y2X8 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
UBE2D4Q9Y2X8 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
UBE2D4Q9Y2X8 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
UBE2D4Q9Y2X8 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC16.36■□□□□ 0.21
UBE2D4Q9Y2X8 DUSP8P5-201ENST00000422884 1815 ntBASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 AGPS-202ENST00000409888 815 ntTSL 4 BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
UBE2D4Q9Y2X8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 MIR6089-201ENST00000616698 64 ntBASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
UBE2D4Q9Y2X8 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC16.33■□□□□ 0.21
UBE2D4Q9Y2X8 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
UBE2D4Q9Y2X8 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
UBE2D4Q9Y2X8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
UBE2D4Q9Y2X8 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC16.33■□□□□ 0.21
UBE2D4Q9Y2X8 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
UBE2D4Q9Y2X8 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
UBE2D4Q9Y2X8 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBE2D4Q9Y2X8 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC16.33■□□□□ 0.2
UBE2D4Q9Y2X8 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
UBE2D4Q9Y2X8 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBE2D4Q9Y2X8 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 LSR-205ENST00000427250 1606 ntTSL 2 BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBE2D4Q9Y2X8 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 RNF166-209ENST00000567844 633 ntTSL 5 BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBE2D4Q9Y2X8 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBE2D4Q9Y2X8 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBE2D4Q9Y2X8 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBE2D4Q9Y2X8 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBE2D4Q9Y2X8 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
UBE2D4Q9Y2X8 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms