Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
KRT40Q6A162 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
KRT40Q6A162 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
KRT40Q6A162 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC27.35■■□□□ 1.97
KRT40Q6A162 AC129492.7-201ENST00000622992 756 ntBASIC27.35■■□□□ 1.97
KRT40Q6A162 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
KRT40Q6A162 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC27.34■■□□□ 1.97
KRT40Q6A162 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.34■■□□□ 1.97
KRT40Q6A162 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
KRT40Q6A162 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
KRT40Q6A162 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.34■■□□□ 1.97
KRT40Q6A162 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
KRT40Q6A162 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC27.34■■□□□ 1.97
KRT40Q6A162 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.33■■□□□ 1.97
KRT40Q6A162 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC27.33■■□□□ 1.97
KRT40Q6A162 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
KRT40Q6A162 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
KRT40Q6A162 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
KRT40Q6A162 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
KRT40Q6A162 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
KRT40Q6A162 KRT18P10-201ENST00000388836 1287 ntBASIC27.32■■□□□ 1.96
KRT40Q6A162 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
KRT40Q6A162 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.32■■□□□ 1.96
KRT40Q6A162 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
KRT40Q6A162 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
KRT40Q6A162 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
KRT40Q6A162 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
KRT40Q6A162 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
KRT40Q6A162 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
KRT40Q6A162 DUX4L9-201ENST00000449051 1259 ntBASIC27.31■■□□□ 1.96
KRT40Q6A162 TRIR-205ENST00000592273 783 ntTSL 3 BASIC27.31■■□□□ 1.96
KRT40Q6A162 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
KRT40Q6A162 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
KRT40Q6A162 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
KRT40Q6A162 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
KRT40Q6A162 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
KRT40Q6A162 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC27.29■■□□□ 1.96
KRT40Q6A162 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC27.29■■□□□ 1.96
KRT40Q6A162 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
KRT40Q6A162 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
KRT40Q6A162 AC018755.3-202ENST00000596210 929 ntBASIC27.29■■□□□ 1.96
KRT40Q6A162 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
KRT40Q6A162 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC27.29■■□□□ 1.96
KRT40Q6A162 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC27.29■■□□□ 1.96
KRT40Q6A162 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
KRT40Q6A162 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
KRT40Q6A162 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.28■■□□□ 1.96
KRT40Q6A162 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
KRT40Q6A162 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
KRT40Q6A162 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC27.28■■□□□ 1.96
KRT40Q6A162 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27.28■■□□□ 1.96
KRT40Q6A162 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
KRT40Q6A162 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
KRT40Q6A162 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
KRT40Q6A162 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC27.27■■□□□ 1.96
KRT40Q6A162 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC27.26■■□□□ 1.95
KRT40Q6A162 RPS2P7-201ENST00000447334 885 ntBASIC27.26■■□□□ 1.95
KRT40Q6A162 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
KRT40Q6A162 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
KRT40Q6A162 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
KRT40Q6A162 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC27.25■■□□□ 1.95
KRT40Q6A162 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
KRT40Q6A162 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC27.25■■□□□ 1.95
KRT40Q6A162 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
KRT40Q6A162 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
KRT40Q6A162 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
KRT40Q6A162 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
KRT40Q6A162 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
KRT40Q6A162 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
KRT40Q6A162 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
KRT40Q6A162 MIR6765-201ENST00000614092 87 ntBASIC27.24■■□□□ 1.95
KRT40Q6A162 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
KRT40Q6A162 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC27.23■■□□□ 1.95
KRT40Q6A162 AL139125.2-201ENST00000623134 1869 ntBASIC27.23■■□□□ 1.95
KRT40Q6A162 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
KRT40Q6A162 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
KRT40Q6A162 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
KRT40Q6A162 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.23■■□□□ 1.95
KRT40Q6A162 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC27.22■■□□□ 1.95
KRT40Q6A162 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
KRT40Q6A162 AP003733.4-201ENST00000623785 1697 ntBASIC27.22■■□□□ 1.95
KRT40Q6A162 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
KRT40Q6A162 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.22■■□□□ 1.95
KRT40Q6A162 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
KRT40Q6A162 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
KRT40Q6A162 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC27.22■■□□□ 1.95
KRT40Q6A162 FOXO3B-201ENST00000395675 1928 ntBASIC27.22■■□□□ 1.95
KRT40Q6A162 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC27.21■■□□□ 1.95
KRT40Q6A162 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC27.21■■□□□ 1.95
KRT40Q6A162 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC27.21■■□□□ 1.95
KRT40Q6A162 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
KRT40Q6A162 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
KRT40Q6A162 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms