Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.16□□□□□ -0.3
FOXA2Q9Y261 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 AC126177.1-201ENST00000547829 2218 ntBASIC13.15□□□□□ -0.3
FOXA2Q9Y261 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 PMS2P4-201ENST00000412466 1052 ntBASIC13.15□□□□□ -0.3
FOXA2Q9Y261 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 PDPK2P-202ENST00000562415 1191 ntBASIC13.15□□□□□ -0.3
FOXA2Q9Y261 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 AL031055.1-201ENST00000606362 631 ntBASIC13.15□□□□□ -0.3
FOXA2Q9Y261 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA2Q9Y261 REM2-202ENST00000536884 1331 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 AC022532.1-201ENST00000624563 1728 ntBASIC13.14□□□□□ -0.31
FOXA2Q9Y261 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 AC068587.6-202ENST00000641839 5619 ntBASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms