Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.27■□□□□ 0.36
CISHQ9NSE2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CISHQ9NSE2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CISHQ9NSE2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.27■□□□□ 0.35
CISHQ9NSE2 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CISHQ9NSE2 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CISHQ9NSE2 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CISHQ9NSE2 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CISHQ9NSE2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.27■□□□□ 0.35
CISHQ9NSE2 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.26■□□□□ 0.35
CISHQ9NSE2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 SPDYE7P-202ENST00000420373 878 ntBASIC17.26■□□□□ 0.35
CISHQ9NSE2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 AC069262.1-201ENST00000539058 672 ntBASIC17.26■□□□□ 0.35
CISHQ9NSE2 BANF1P1-201ENST00000553684 263 ntBASIC17.26■□□□□ 0.35
CISHQ9NSE2 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.26■□□□□ 0.35
CISHQ9NSE2 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CISHQ9NSE2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 KRT18P28-201ENST00000453838 1332 ntBASIC17.25■□□□□ 0.35
CISHQ9NSE2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 AL136982.4-201ENST00000437689 1740 ntBASIC17.25■□□□□ 0.35
CISHQ9NSE2 AL691432.1-201ENST00000596308 1422 ntBASIC17.25■□□□□ 0.35
CISHQ9NSE2 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 AC004449.1-201ENST00000564240 433 ntBASIC17.25■□□□□ 0.35
CISHQ9NSE2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 AC112504.1-201ENST00000623415 1841 ntBASIC17.25■□□□□ 0.35
CISHQ9NSE2 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.25■□□□□ 0.35
CISHQ9NSE2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CISHQ9NSE2 AP001282.1-201ENST00000531301 1499 ntBASIC17.24■□□□□ 0.35
CISHQ9NSE2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CISHQ9NSE2 AC134407.2-201ENST00000625089 1978 ntBASIC17.24■□□□□ 0.35
CISHQ9NSE2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.24■□□□□ 0.35
CISHQ9NSE2 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CISHQ9NSE2 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms