Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 RBM17P3-201ENST00000417687 1192 ntBASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 AC139887.3-201ENST00000568585 713 ntBASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 MTDHP3-201ENST00000594186 672 ntBASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 PI4KAP1-204ENST00000612579 1703 ntBASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 AC006058.4-201ENST00000624016 1670 ntBASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 AC106795.1-205ENST00000512851 1056 ntBASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 MPDU1-223ENST00000582151 728 ntBASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 AL596087.1-201ENST00000400979 1969 ntBASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 AL603832.2-201ENST00000566195 2125 ntBASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CHMP1AQ9HD42 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC14.04□□□□□ -0.16
CHMP1AQ9HD42 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms