Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AC104306.2-201ENST00000451877 341 ntBASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC20.53■□□□□ 0.88
SHANK3Q9BYB0 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 PFN2-215ENST00000497148 743 ntTSL 4 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 AP003171.2-201ENST00000528208 925 ntBASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 AC105129.2-201ENST00000559536 390 ntBASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK3Q9BYB0 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SHANK3Q9BYB0 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SHANK3Q9BYB0 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHANK3Q9BYB0 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHANK3Q9BYB0 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHANK3Q9BYB0 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK3Q9BYB0 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 MIR1202-201ENST00000408529 83 ntBASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 FAM197Y7-201ENST00000432892 766 ntBASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 ALOX12P2-203ENST00000570921 1945 ntBASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 AC018735.1-201ENST00000437208 1502 ntBASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 KRT8P13-201ENST00000463294 1010 ntBASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC20.5■□□□□ 0.87
SHANK3Q9BYB0 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC20.49■□□□□ 0.87
SHANK3Q9BYB0 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms