Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 HAUS4P1-201ENST00000406739 1145 ntBASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 ELK2BP-201ENST00000415014 1224 ntBASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 AC138894.3-201ENST00000603787 634 ntBASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28BQ9BUN5 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 AL355877.3-201ENST00000622820 899 ntBASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 AC068587.6-202ENST00000641839 5619 ntBASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28BQ9BUN5 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 AC069148.1-201ENST00000608741 768 ntBASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
CCDC28BQ9BUN5 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms