Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NKX3-1Q99801 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.24□□□□□ -0.13
NKX3-1Q99801 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 AC009078.2-202ENST00000463353 338 ntBASIC14.23□□□□□ -0.13
NKX3-1Q99801 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.23□□□□□ -0.13
NKX3-1Q99801 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 MIR600HG-201ENST00000449175 5984 ntBASIC14.23□□□□□ -0.13
NKX3-1Q99801 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NKX3-1Q99801 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 AL160237.2-201ENST00000556165 472 ntBASIC14.22□□□□□ -0.13
NKX3-1Q99801 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 AC091167.2-201ENST00000579581 588 ntBASIC14.22□□□□□ -0.13
NKX3-1Q99801 AC010654.1-201ENST00000615722 808 ntBASIC14.22□□□□□ -0.13
NKX3-1Q99801 REXO1L6P-202ENST00000619970 1078 ntBASIC14.22□□□□□ -0.13
NKX3-1Q99801 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.22□□□□□ -0.13
NKX3-1Q99801 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.22□□□□□ -0.13
NKX3-1Q99801 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NKX3-1Q99801 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 TNRC18P2-201ENST00000417666 2714 ntBASIC14.21□□□□□ -0.13
NKX3-1Q99801 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 LINC01144-201ENST00000626198 1710 ntBASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms