Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
HPS3Q969F9 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 AC105917.1-201ENST00000506637 2539 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.97■□□□□ 0.47
HPS3Q969F9 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 MIR346-201ENST00000362234 95 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.97■□□□□ 0.47
HPS3Q969F9 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
HPS3Q969F9 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.97■□□□□ 0.47
HPS3Q969F9 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.97■□□□□ 0.47
HPS3Q969F9 AL592309.1-201ENST00000443127 649 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HPS3Q969F9 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.97■□□□□ 0.47
HPS3Q969F9 RN7SL589P-201ENST00000481268 310 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.97■□□□□ 0.47
HPS3Q969F9 YBX1P5-201ENST00000509441 847 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.97■□□□□ 0.47
HPS3Q969F9 SLC25A39P2-201ENST00000537614 270 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.97■□□□□ 0.47
HPS3Q969F9 AC092865.5-201ENST00000545435 363 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.97■□□□□ 0.47
HPS3Q969F9 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.97■□□□□ 0.47
HPS3Q969F9 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.97■□□□□ 0.47
HPS3Q969F9 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.97■□□□□ 0.47
HPS3Q969F9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HPS3Q969F9 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.97■□□□□ 0.47
HPS3Q969F9 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 UXT-AS1-201ENST00000590504 1525 ntBASIC17.97■□□□□ 0.47
HPS3Q969F9 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HPS3Q969F9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.97■□□□□ 0.47
HPS3Q969F9 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HPS3Q969F9 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.96■□□□□ 0.47
HPS3Q969F9 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.96■□□□□ 0.47
HPS3Q969F9 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HPS3Q969F9 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HPS3Q969F9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 UPF3AP3-201ENST00000420996 769 ntBASIC17.96■□□□□ 0.47
HPS3Q969F9 FAM58DP-201ENST00000428076 619 ntBASIC17.96■□□□□ 0.47
HPS3Q969F9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.96■□□□□ 0.47
HPS3Q969F9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 ACTG1P14-201ENST00000446382 1122 ntBASIC17.96■□□□□ 0.47
HPS3Q969F9 AC098859.1-201ENST00000502915 1238 ntBASIC17.96■□□□□ 0.47
HPS3Q969F9 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.96■□□□□ 0.47
HPS3Q969F9 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.96■□□□□ 0.47
HPS3Q969F9 AC061975.2-201ENST00000581722 295 ntBASIC17.96■□□□□ 0.47
HPS3Q969F9 MIR4321-201ENST00000592276 80 ntBASIC17.96■□□□□ 0.47
HPS3Q969F9 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.96■□□□□ 0.47
HPS3Q969F9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.96■□□□□ 0.47
HPS3Q969F9 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 AC134407.2-201ENST00000625089 1978 ntBASIC17.96■□□□□ 0.47
HPS3Q969F9 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.96■□□□□ 0.47
HPS3Q969F9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HPS3Q969F9 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.96■□□□□ 0.47
HPS3Q969F9 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.96■□□□□ 0.46
HPS3Q969F9 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HPS3Q969F9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.95■□□□□ 0.46
HPS3Q969F9 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
HPS3Q969F9 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HPS3Q969F9 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms