Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 MIR4453-201ENST00000584019 89 ntBASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.48■□□□□ 0.23
SHROOM3Q8TF72 GK-202ENST00000378941 458 ntTSL 3 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AC236430.1-201ENST00000402231 743 ntBASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AC098859.1-201ENST00000502915 1238 ntBASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 SPCS2P4-201ENST00000436160 681 ntBASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AC002472.2-201ENST00000442739 958 ntBASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 TSPY16P-201ENST00000449843 468 ntBASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 AC090340.1-201ENST00000620778 4980 ntBASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHROOM3Q8TF72 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 AL606495.2-201ENST00000605867 535 ntBASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SHROOM3Q8TF72 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms