Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 HMGA1P7-201ENST00000406908 502 ntBASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 FAAHP1-202ENST00000446499 1238 ntBASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AC109635.5-201ENST00000533593 962 ntBASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AL365330.1-201ENST00000607459 531 ntBASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AP002414.3-201ENST00000589352 1468 ntBASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 CDC14C-201ENST00000428251 1719 ntBASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 AC069224.1-201ENST00000566372 1715 ntBASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 KRT18P56-201ENST00000507275 550 ntBASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 FAM215A-202ENST00000632077 792 ntBASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CCDC54Q8NEL0 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC54Q8NEL0 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC54Q8NEL0 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC54Q8NEL0 TCAF2P1-201ENST00000291129 2421 ntBASIC14.21□□□□□ -0.14
CCDC54Q8NEL0 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.21□□□□□ -0.14
CCDC54Q8NEL0 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 LINC02447-202ENST00000501888 2146 ntBASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC54Q8NEL0 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms