Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AL365330.1-201ENST00000607459 531 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AL355864.2-201ENST00000447420 863 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 ECM1P1-201ENST00000604092 1279 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AC145423.3-201ENST00000615987 467 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AC134407.2-201ENST00000625089 1978 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AKR7A2P1-201ENST00000460134 915 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 POU5F1P6-201ENST00000466990 990 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AP003171.2-201ENST00000528208 925 ntBASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
VPS13DQ5THJ4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 OARD1-212ENST00000482515 832 ntTSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 KLK3-211ENST00000597483 810 ntTSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 HIST2H2BB-201ENST00000449108 381 ntBASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 AC022137.2-201ENST00000503482 481 ntBASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 Z93015.1-201ENST00000451718 390 ntBASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 AF254983.2-201ENST00000612331 135 ntBASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC10.66□□□□□ -0.7
VPS13DQ5THJ4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms