Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 FAM86EP-206ENST00000510506 987 ntBASIC14.6□□□□□ -0.07
CCDC58Q4VC31 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 AC064862.7-201ENST00000604520 867 ntBASIC14.6□□□□□ -0.07
CCDC58Q4VC31 AP001350.2-201ENST00000625104 1094 ntBASIC14.6□□□□□ -0.07
CCDC58Q4VC31 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 AC069224.1-201ENST00000566372 1715 ntBASIC14.6□□□□□ -0.07
CCDC58Q4VC31 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 AC106881.1-201ENST00000605849 3329 ntBASIC14.59□□□□□ -0.07
CCDC58Q4VC31 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 AC087163.2-201ENST00000457299 853 ntBASIC14.59□□□□□ -0.07
CCDC58Q4VC31 AC012615.1-201ENST00000565797 1299 ntBASIC14.59□□□□□ -0.07
CCDC58Q4VC31 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 CYP2A7P1-201ENST00000595391 815 ntBASIC14.59□□□□□ -0.07
CCDC58Q4VC31 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC58Q4VC31 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.58□□□□□ -0.07
CCDC58Q4VC31 AL353732.1-201ENST00000569618 1459 ntBASIC14.58□□□□□ -0.08
CCDC58Q4VC31 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.58□□□□□ -0.08
CCDC58Q4VC31 BX005266.1-201ENST00000473402 457 ntBASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms