Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.83■□□□□ 0.28
CHD9Q3L8U1 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CHD9Q3L8U1 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
CHD9Q3L8U1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 KRT18P43-201ENST00000469825 1281 ntBASIC16.82■□□□□ 0.28
CHD9Q3L8U1 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 AC023310.1-201ENST00000554836 735 ntBASIC16.82■□□□□ 0.28
CHD9Q3L8U1 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 POM121L10P-201ENST00000436994 1285 ntBASIC16.82■□□□□ 0.28
CHD9Q3L8U1 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHD9Q3L8U1 REXO1L1P-202ENST00000608646 1974 ntBASIC16.81■□□□□ 0.28
CHD9Q3L8U1 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 AL121723.1-201ENST00000445194 1519 ntBASIC16.81■□□□□ 0.28
CHD9Q3L8U1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 RN7SL574P-201ENST00000581512 297 ntBASIC16.81■□□□□ 0.28
CHD9Q3L8U1 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHD9Q3L8U1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 CD8B2-202ENST00000417670 633 ntBASIC16.8■□□□□ 0.28
CHD9Q3L8U1 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 MBP-227ENST00000526111 581 ntTSL 4 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 AP000346.4-201ENST00000614827 381 ntBASIC16.8■□□□□ 0.28
CHD9Q3L8U1 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.8■□□□□ 0.28
CHD9Q3L8U1 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 SERPINA13P-202ENST00000478994 924 ntBASIC16.8■□□□□ 0.28
CHD9Q3L8U1 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 AC141586.5-201ENST00000624546 2050 ntBASIC16.8■□□□□ 0.28
CHD9Q3L8U1 AL592424.1-201ENST00000563624 1536 ntBASIC16.8■□□□□ 0.28
CHD9Q3L8U1 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms