Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 FAM58CP-201ENST00000435741 640 ntBASIC14.54□□□□□ -0.08
CLRN1P58418 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.54□□□□□ -0.08
CLRN1P58418 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.54□□□□□ -0.08
CLRN1P58418 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.54□□□□□ -0.08
CLRN1P58418 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.54□□□□□ -0.08
CLRN1P58418 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
CLRN1P58418 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CLRN1P58418 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN1P58418 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.53□□□□□ -0.08
CLRN1P58418 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.53□□□□□ -0.08
CLRN1P58418 MIR648-201ENST00000385046 94 ntBASIC14.53□□□□□ -0.08
CLRN1P58418 MIR574-201ENST00000385209 96 ntBASIC14.53□□□□□ -0.08
CLRN1P58418 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.53□□□□□ -0.08
CLRN1P58418 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
CLRN1P58418 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 AC099522.2-201ENST00000607001 744 ntBASIC14.53□□□□□ -0.08
CLRN1P58418 AC008894.3-201ENST00000624324 3103 ntBASIC14.53□□□□□ -0.08
CLRN1P58418 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN1P58418 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN1P58418 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
CLRN1P58418 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
CLRN1P58418 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.52□□□□□ -0.08
CLRN1P58418 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.52□□□□□ -0.08
CLRN1P58418 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN1P58418 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CLRN1P58418 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
CLRN1P58418 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN1P58418 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.52□□□□□ -0.08
CLRN1P58418 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.52□□□□□ -0.08
CLRN1P58418 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.52□□□□□ -0.08
CLRN1P58418 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN1P58418 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN1P58418 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.52□□□□□ -0.08
CLRN1P58418 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN1P58418 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms