Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.69■□□□□ 0.58
CTCFP49711 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTCFP49711 AC012317.2-201ENST00000623305 2251 ntBASIC18.69■□□□□ 0.58
CTCFP49711 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 KRT8P37-201ENST00000451609 1420 ntBASIC18.68■□□□□ 0.58
CTCFP49711 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.68■□□□□ 0.58
CTCFP49711 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CTCFP49711 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.68■□□□□ 0.58
CTCFP49711 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CTCFP49711 SOCS2P1-201ENST00000417727 557 ntBASIC18.68■□□□□ 0.58
CTCFP49711 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC18.68■□□□□ 0.58
CTCFP49711 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC18.68■□□□□ 0.58
CTCFP49711 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 IQSEC3P1-201ENST00000538799 536 ntBASIC18.68■□□□□ 0.58
CTCFP49711 AC104982.3-201ENST00000581995 514 ntBASIC18.68■□□□□ 0.58
CTCFP49711 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 AC005702.4-201ENST00000618393 416 ntBASIC18.68■□□□□ 0.58
CTCFP49711 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.68■□□□□ 0.58
CTCFP49711 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.68■□□□□ 0.58
CTCFP49711 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTCFP49711 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CTCFP49711 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.68■□□□□ 0.58
CTCFP49711 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CTCFP49711 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC18.67■□□□□ 0.58
CTCFP49711 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.67■□□□□ 0.58
CTCFP49711 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.67■□□□□ 0.58
CTCFP49711 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC18.67■□□□□ 0.58
CTCFP49711 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.67■□□□□ 0.58
CTCFP49711 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.67■□□□□ 0.58
CTCFP49711 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.67■□□□□ 0.58
CTCFP49711 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTCFP49711 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.66■□□□□ 0.58
CTCFP49711 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.66■□□□□ 0.58
CTCFP49711 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.66■□□□□ 0.58
CTCFP49711 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC18.66■□□□□ 0.58
CTCFP49711 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CTCFP49711 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.66■□□□□ 0.58
CTCFP49711 KRTAP10-13P-201ENST00000412914 571 ntBASIC18.66■□□□□ 0.58
CTCFP49711 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC18.66■□□□□ 0.58
CTCFP49711 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.66■□□□□ 0.58
CTCFP49711 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CTCFP49711 LARP4-220ENST00000615080 856 ntTSL 5 BASIC18.66■□□□□ 0.58
CTCFP49711 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.66■□□□□ 0.58
CTCFP49711 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC18.66■□□□□ 0.58
CTCFP49711 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 AHCYP2-201ENST00000430630 1300 ntBASIC18.66■□□□□ 0.58
CTCFP49711 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CTCFP49711 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms