Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL18A1P39060 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL18A1P39060 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL18A1P39060 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.93■□□□□ 0.94
COL18A1P39060 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.93■□□□□ 0.94
COL18A1P39060 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL18A1P39060 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL18A1P39060 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL18A1P39060 Z93015.1-201ENST00000451718 390 ntBASIC20.92■□□□□ 0.94
COL18A1P39060 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
COL18A1P39060 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC20.92■□□□□ 0.94
COL18A1P39060 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC20.92■□□□□ 0.94
COL18A1P39060 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC20.92■□□□□ 0.94
COL18A1P39060 AC091271.1-201ENST00000611877 1162 ntBASIC20.92■□□□□ 0.94
COL18A1P39060 AC145423.3-201ENST00000615987 467 ntBASIC20.92■□□□□ 0.94
COL18A1P39060 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
COL18A1P39060 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC20.92■□□□□ 0.94
COL18A1P39060 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC20.92■□□□□ 0.94
COL18A1P39060 OARD1-212ENST00000482515 832 ntTSL 2 BASIC20.92■□□□□ 0.94
COL18A1P39060 RPSAP36-202ENST00000494591 1261 ntBASIC20.92■□□□□ 0.94
COL18A1P39060 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.92■□□□□ 0.94
COL18A1P39060 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL18A1P39060 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.92■□□□□ 0.94
COL18A1P39060 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC20.91■□□□□ 0.94
COL18A1P39060 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC20.91■□□□□ 0.94
COL18A1P39060 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC20.91■□□□□ 0.94
COL18A1P39060 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC20.91■□□□□ 0.94
COL18A1P39060 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC20.91■□□□□ 0.94
COL18A1P39060 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC20.91■□□□□ 0.94
COL18A1P39060 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 ACR-203ENST00000529621 708 ntTSL 5 BASIC20.91■□□□□ 0.94
COL18A1P39060 AP006547.1-201ENST00000563435 692 ntBASIC20.91■□□□□ 0.94
COL18A1P39060 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC20.91■□□□□ 0.94
COL18A1P39060 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
COL18A1P39060 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.91■□□□□ 0.94
COL18A1P39060 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL18A1P39060 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 AL096828.3-201ENST00000615354 462 ntBASIC20.9■□□□□ 0.94
COL18A1P39060 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
COL18A1P39060 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 MIR663B-201ENST00000408361 115 ntBASIC20.9■□□□□ 0.94
COL18A1P39060 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC20.9■□□□□ 0.94
COL18A1P39060 HSPB1P2-201ENST00000448722 546 ntBASIC20.9■□□□□ 0.94
COL18A1P39060 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC20.9■□□□□ 0.94
COL18A1P39060 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC20.9■□□□□ 0.94
COL18A1P39060 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL18A1P39060 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC20.9■□□□□ 0.94
COL18A1P39060 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC20.9■□□□□ 0.94
COL18A1P39060 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC20.9■□□□□ 0.94
COL18A1P39060 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
COL18A1P39060 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.9■□□□□ 0.94
COL18A1P39060 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL18A1P39060 FOS-202ENST00000535987 1402 ntTSL 2 BASIC20.89■□□□□ 0.94
COL18A1P39060 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL18A1P39060 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms