Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
BRCA1P38398 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
BRCA1P38398 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
BRCA1P38398 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.27■□□□□ 0.67
BRCA1P38398 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
BRCA1P38398 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
BRCA1P38398 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC19.26■□□□□ 0.67
BRCA1P38398 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 PRKXP1-201ENST00000561423 1122 ntBASIC19.26■□□□□ 0.67
BRCA1P38398 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
BRCA1P38398 YRDCP1-201ENST00000621419 643 ntBASIC19.26■□□□□ 0.67
BRCA1P38398 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC19.26■□□□□ 0.67
BRCA1P38398 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.26■□□□□ 0.67
BRCA1P38398 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.26■□□□□ 0.67
BRCA1P38398 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.26■□□□□ 0.67
BRCA1P38398 HLA-A-202ENST00000376806 1854 ntBASIC19.26■□□□□ 0.67
BRCA1P38398 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.26■□□□□ 0.67
BRCA1P38398 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.26■□□□□ 0.67
BRCA1P38398 AC104784.1-201ENST00000473096 294 ntBASIC19.26■□□□□ 0.67
BRCA1P38398 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC19.26■□□□□ 0.67
BRCA1P38398 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.26■□□□□ 0.67
BRCA1P38398 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.26■□□□□ 0.67
BRCA1P38398 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 AP005019.2-201ENST00000615104 511 ntBASIC19.26■□□□□ 0.67
BRCA1P38398 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRCA1P38398 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.26■□□□□ 0.67
BRCA1P38398 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.26■□□□□ 0.67
BRCA1P38398 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
BRCA1P38398 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.25■□□□□ 0.67
BRCA1P38398 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC19.25■□□□□ 0.67
BRCA1P38398 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.25■□□□□ 0.67
BRCA1P38398 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRCA1P38398 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRCA1P38398 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC19.25■□□□□ 0.67
BRCA1P38398 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
BRCA1P38398 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC19.25■□□□□ 0.67
BRCA1P38398 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC19.25■□□□□ 0.67
BRCA1P38398 RNF41-210ENST00000552244 716 ntTSL 3 BASIC19.25■□□□□ 0.67
BRCA1P38398 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
BRCA1P38398 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC19.25■□□□□ 0.67
BRCA1P38398 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC19.25■□□□□ 0.67
BRCA1P38398 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BRCA1P38398 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC19.25■□□□□ 0.67
BRCA1P38398 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC19.25■□□□□ 0.67
BRCA1P38398 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.25■□□□□ 0.67
BRCA1P38398 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRCA1P38398 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRCA1P38398 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC19.24■□□□□ 0.67
BRCA1P38398 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 DIO1-215ENST00000610607 796 ntTSL 5 BASIC19.24■□□□□ 0.67
BRCA1P38398 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BRCA1P38398 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
BRCA1P38398 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.24■□□□□ 0.67
BRCA1P38398 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC19.24■□□□□ 0.67
BRCA1P38398 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
BRCA1P38398 SUPT4H1P2-201ENST00000501248 353 ntBASIC19.24■□□□□ 0.67
BRCA1P38398 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC19.24■□□□□ 0.67
BRCA1P38398 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC19.24■□□□□ 0.67
BRCA1P38398 ETV2-208ENST00000621247 941 ntTSL 5 BASIC19.24■□□□□ 0.67
BRCA1P38398 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
BRCA1P38398 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
BRCA1P38398 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.23■□□□□ 0.67
BRCA1P38398 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
BRCA1P38398 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 AP001282.1-201ENST00000531301 1499 ntBASIC19.23■□□□□ 0.67
BRCA1P38398 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
BRCA1P38398 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
BRCA1P38398 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
BRCA1P38398 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRCA1P38398 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.23■□□□□ 0.67
BRCA1P38398 RAC2-202ENST00000401529 569 ntTSL 4 BASIC19.23■□□□□ 0.67
BRCA1P38398 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms