Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
PTPN6P29350 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN6P29350 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN6P29350 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN6P29350 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN6P29350 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
PTPN6P29350 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
PTPN6P29350 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN6P29350 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.42■□□□□ 0.06
PTPN6P29350 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
PTPN6P29350 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN6P29350 AC025580.3-201ENST00000617932 1424 ntBASIC15.42■□□□□ 0.06
PTPN6P29350 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN6P29350 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN6P29350 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN6P29350 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 DNAJB3-201ENST00000446806 729 ntBASIC15.41■□□□□ 0.06
PTPN6P29350 AL513480.1-201ENST00000451731 511 ntBASIC15.41■□□□□ 0.06
PTPN6P29350 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN6P29350 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PTPN6P29350 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.41■□□□□ 0.06
PTPN6P29350 PDPK2P-202ENST00000562415 1191 ntBASIC15.41■□□□□ 0.06
PTPN6P29350 AL031432.2-201ENST00000566714 459 ntBASIC15.41■□□□□ 0.06
PTPN6P29350 AL928711.1-201ENST00000570165 459 ntBASIC15.41■□□□□ 0.06
PTPN6P29350 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 MTDHP5-201ENST00000598980 586 ntBASIC15.41■□□□□ 0.06
PTPN6P29350 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN6P29350 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
PTPN6P29350 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN6P29350 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PTPN6P29350 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN6P29350 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN6P29350 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN6P29350 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN6P29350 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PTPN6P29350 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PTPN6P29350 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PTPN6P29350 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PTPN6P29350 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.4■□□□□ 0.06
PTPN6P29350 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.4■□□□□ 0.06
PTPN6P29350 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.4■□□□□ 0.06
PTPN6P29350 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.4■□□□□ 0.06
PTPN6P29350 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.4■□□□□ 0.06
PTPN6P29350 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.4■□□□□ 0.06
PTPN6P29350 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PTPN6P29350 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.4■□□□□ 0.06
PTPN6P29350 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTPN6P29350 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTPN6P29350 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms