Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
VCANP13611 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.47■□□□□ 0.23
VCANP13611 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 BICD1-207ENST00000551848 1962 ntBASIC16.47■□□□□ 0.23
VCANP13611 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
VCANP13611 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 HSPB1P2-201ENST00000448722 546 ntBASIC16.47■□□□□ 0.23
VCANP13611 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.47■□□□□ 0.23
VCANP13611 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.47■□□□□ 0.23
VCANP13611 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.47■□□□□ 0.23
VCANP13611 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.47■□□□□ 0.23
VCANP13611 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.47■□□□□ 0.23
VCANP13611 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.47■□□□□ 0.23
VCANP13611 SCARNA21-201ENST00000517026 139 ntBASIC16.47■□□□□ 0.23
VCANP13611 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.47■□□□□ 0.23
VCANP13611 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
VCANP13611 AL023775.1-201ENST00000454907 1746 ntBASIC16.47■□□□□ 0.23
VCANP13611 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.47■□□□□ 0.23
VCANP13611 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VCANP13611 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
VCANP13611 AL133267.1-201ENST00000398220 340 ntBASIC16.46■□□□□ 0.23
VCANP13611 BAATP1-201ENST00000412284 1225 ntBASIC16.46■□□□□ 0.23
VCANP13611 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.46■□□□□ 0.23
VCANP13611 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.46■□□□□ 0.23
VCANP13611 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.46■□□□□ 0.23
VCANP13611 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.46■□□□□ 0.23
VCANP13611 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 AC139713.2-201ENST00000641328 2723 ntBASIC16.46■□□□□ 0.23
VCANP13611 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VCANP13611 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
VCANP13611 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.46■□□□□ 0.23
VCANP13611 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
VCANP13611 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VCANP13611 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VCANP13611 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
VCANP13611 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.46■□□□□ 0.22
VCANP13611 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
VCANP13611 AL590640.2-201ENST00000457038 527 ntBASIC16.46■□□□□ 0.22
VCANP13611 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.46■□□□□ 0.22
VCANP13611 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
VCANP13611 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
VCANP13611 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 TUBBP5-203ENST00000508529 1334 ntBASIC16.45■□□□□ 0.22
VCANP13611 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 FGFR3P1-201ENST00000449999 601 ntBASIC16.45■□□□□ 0.22
VCANP13611 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.45■□□□□ 0.22
VCANP13611 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.45■□□□□ 0.22
VCANP13611 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms