Protein–RNA interactions for Protein: O95475

SIX6, Homeobox protein SIX6, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX6O95475 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
SIX6O95475 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.65□□□□□ -0.22
SIX6O95475 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.65□□□□□ -0.22
SIX6O95475 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
SIX6O95475 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SIX6O95475 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.65□□□□□ -0.22
SIX6O95475 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 PEX7-202ENST00000367756 680 ntTSL 3 BASIC13.65□□□□□ -0.22
SIX6O95475 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 NUS1P1-201ENST00000446295 882 ntBASIC13.65□□□□□ -0.22
SIX6O95475 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
SIX6O95475 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
SIX6O95475 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 FAM87A-204ENST00000613235 858 ntBASIC13.65□□□□□ -0.22
SIX6O95475 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.65□□□□□ -0.22
SIX6O95475 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.65□□□□□ -0.22
SIX6O95475 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SIX6O95475 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 GPAA1P2-202ENST00000606848 1787 ntBASIC13.65□□□□□ -0.22
SIX6O95475 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SIX6O95475 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SIX6O95475 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.65□□□□□ -0.23
SIX6O95475 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.65□□□□□ -0.23
SIX6O95475 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 KRT8P39-201ENST00000396270 1433 ntBASIC13.64□□□□□ -0.23
SIX6O95475 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SIX6O95475 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 AC026396.1-201ENST00000419388 421 ntBASIC13.64□□□□□ -0.23
SIX6O95475 HLA-L-209ENST00000420110 1011 ntBASIC13.64□□□□□ -0.23
SIX6O95475 ECEL1P3-201ENST00000427961 737 ntBASIC13.64□□□□□ -0.23
SIX6O95475 AC012618.2-201ENST00000428058 849 ntBASIC13.64□□□□□ -0.23
SIX6O95475 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC13.64□□□□□ -0.23
SIX6O95475 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC13.64□□□□□ -0.23
SIX6O95475 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.64□□□□□ -0.23
SIX6O95475 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.64□□□□□ -0.23
SIX6O95475 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.64□□□□□ -0.23
SIX6O95475 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.64□□□□□ -0.23
SIX6O95475 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SIX6O95475 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.64□□□□□ -0.23
SIX6O95475 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.64□□□□□ -0.23
SIX6O95475 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SIX6O95475 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SIX6O95475 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SIX6O95475 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.63□□□□□ -0.23
SIX6O95475 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SIX6O95475 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SIX6O95475 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SIX6O95475 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SIX6O95475 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SIX6O95475 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.63□□□□□ -0.23
SIX6O95475 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms