Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
HMGB3O15347 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 TSPY15P-201ENST00000457163 923 ntBASIC13.14□□□□□ -0.31
HMGB3O15347 AL359075.1-203ENST00000462729 1002 ntBASIC13.14□□□□□ -0.31
HMGB3O15347 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
HMGB3O15347 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
HMGB3O15347 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 SNX21-213ENST00000614929 587 ntTSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 CLN6-221ENST00000637494 765 ntTSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 GGT3P-204ENST00000453783 1664 ntBASIC13.14□□□□□ -0.31
HMGB3O15347 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
HMGB3O15347 REXO1L8P-201ENST00000604378 1897 ntBASIC13.14□□□□□ -0.31
HMGB3O15347 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.14□□□□□ -0.31
HMGB3O15347 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.14□□□□□ -0.31
HMGB3O15347 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HMGB3O15347 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC13.13□□□□□ -0.31
HMGB3O15347 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 ARHGEF10-205ENST00000518288 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HMGB3O15347 KLF4P1-201ENST00000412782 1185 ntBASIC13.13□□□□□ -0.31
HMGB3O15347 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.13□□□□□ -0.31
HMGB3O15347 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 L1CAM-202ENST00000361981 5004 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.13□□□□□ -0.31
HMGB3O15347 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 Z83836.1-201ENST00000624605 1642 ntBASIC13.13□□□□□ -0.31
HMGB3O15347 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 AC125634.1-201ENST00000438758 1403 ntBASIC13.13□□□□□ -0.31
HMGB3O15347 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HMGB3O15347 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HMGB3O15347 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC13.13□□□□□ -0.31
HMGB3O15347 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
HMGB3O15347 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HMGB3O15347 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms