Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 BNIP3P29-201ENST00000598302 571 ntBASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 AC084346.2-201ENST00000607097 949 ntBASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 AC011447.5-201ENST00000616168 564 ntBASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.55■□□□□ 0.08
PCDHGA1Q9Y5H4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 AL512652.2-201ENST00000625156 1716 ntBASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 AL162726.2-201ENST00000438986 1017 ntBASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 CROCCP4-201ENST00000457096 498 ntBASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 USP32P1-208ENST00000506594 1164 ntBASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 GPAA1P2-202ENST00000606848 1787 ntBASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.54■□□□□ 0.08
PCDHGA1Q9Y5H4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 PCDHA12-202ENST00000613593 2588 ntBASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 ANKRD19P-201ENST00000338192 862 ntBASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 AL442647.2-201ENST00000429864 857 ntBASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PCDHGA1Q9Y5H4 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms