Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 FO393414.2-201ENST00000405153 598 ntBASIC17.09■□□□□ 0.33
CDH9Q9ULB4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 AC010336.2-201ENST00000564226 506 ntBASIC17.09■□□□□ 0.33
CDH9Q9ULB4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 MIR6069-201ENST00000620069 79 ntBASIC17.09■□□□□ 0.33
CDH9Q9ULB4 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH9Q9ULB4 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH9Q9ULB4 MTHFR-217ENST00000641820 1569 ntBASIC17.08■□□□□ 0.32
CDH9Q9ULB4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 AP001282.1-201ENST00000531301 1499 ntBASIC17.08■□□□□ 0.32
CDH9Q9ULB4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 MIR648-201ENST00000385046 94 ntBASIC17.08■□□□□ 0.32
CDH9Q9ULB4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 FAM207CP-201ENST00000443486 507 ntBASIC17.08■□□□□ 0.32
CDH9Q9ULB4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 AC009407.1-201ENST00000568958 598 ntBASIC17.08■□□□□ 0.32
CDH9Q9ULB4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.08■□□□□ 0.32
CDH9Q9ULB4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CDH9Q9ULB4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH9Q9ULB4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms