Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 TMBIM7P-203ENST00000641617 1718 ntBASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCM2LQ9NUG4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 GPX1P2-201ENST00000429271 606 ntBASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 MPDU1-223ENST00000582151 728 ntBASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 PGM5P2-202ENST00000637225 1043 ntBASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 AL109954.1-202ENST00000564051 2148 ntBASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.53■□□□□ 0.08
CCM2LQ9NUG4 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 TP73-AS1-210ENST00000637775 1455 ntBASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 RBM17P3-201ENST00000417687 1192 ntBASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 IGHV3-22-201ENST00000520721 359 ntBASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 AP000867.4-201ENST00000641616 219 ntBASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 AC092919.2-201ENST00000623631 1645 ntBASIC15.52■□□□□ 0.08
CCM2LQ9NUG4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCM2LQ9NUG4 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCM2LQ9NUG4 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCM2LQ9NUG4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CCM2LQ9NUG4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms