Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.17■□□□□ 0.18
TREX1Q9NSU2 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 PRAL-201ENST00000624952 3286 ntBASIC16.16■□□□□ 0.18
TREX1Q9NSU2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AC069335.1-201ENST00000489972 472 ntBASIC16.16■□□□□ 0.18
TREX1Q9NSU2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AL691432.1-201ENST00000596308 1422 ntBASIC16.16■□□□□ 0.18
TREX1Q9NSU2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TREX1Q9NSU2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 TIMM8BP1-201ENST00000452384 211 ntBASIC16.15■□□□□ 0.18
TREX1Q9NSU2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 ELL2P1-201ENST00000413990 1906 ntBASIC16.15■□□□□ 0.18
TREX1Q9NSU2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TREX1Q9NSU2 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.18
TREX1Q9NSU2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.18
TREX1Q9NSU2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.14■□□□□ 0.18
TREX1Q9NSU2 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TREX1Q9NSU2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms