Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 GGT3P-204ENST00000453783 1664 ntBASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 PRYP5-201ENST00000451909 266 ntBASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 FOSL1P1-201ENST00000511041 816 ntBASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 NKAPP1-205ENST00000585790 367 ntBASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 AL139424.1-201ENST00000607572 797 ntBASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 AL671710.1-201ENST00000610245 2349 ntBASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CHMP1AQ9HD42 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 ATP5G2P1-201ENST00000433580 426 ntBASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AL732292.2-201ENST00000609649 430 ntBASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AL589182.2-201ENST00000619332 1049 ntBASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 AC022532.1-201ENST00000624563 1728 ntBASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.07□□□□□ -0.16
CHMP1AQ9HD42 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 AC073347.1-201ENST00000421633 2643 ntBASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CHMP1AQ9HD42 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms