Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.83■□□□□ 0.28
HERPUD2Q9BSE4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HERPUD2Q9BSE4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
HERPUD2Q9BSE4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
HERPUD2Q9BSE4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HERPUD2Q9BSE4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.83■□□□□ 0.28
HERPUD2Q9BSE4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HERPUD2Q9BSE4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 AC134407.2-201ENST00000625089 1978 ntBASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 AC022532.1-201ENST00000624563 1728 ntBASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HERPUD2Q9BSE4 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 AC023824.1-201ENST00000562945 2975 ntBASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 WASH6P-202ENST00000359512 1437 ntBASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HERPUD2Q9BSE4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 PRYP6-201ENST00000514804 343 ntBASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 AC092865.5-201ENST00000545435 363 ntBASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 PDPK2P-202ENST00000562415 1191 ntBASIC16.8■□□□□ 0.28
HERPUD2Q9BSE4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms