Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
USP47Q96K76 AC010491.1-201ENST00000563101 2797 ntBASIC22.57■■□□□ 1.2
USP47Q96K76 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
USP47Q96K76 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 HNRNPA3P1-201ENST00000401429 1139 ntBASIC22.57■■□□□ 1.2
USP47Q96K76 HNRNPA3P5-201ENST00000455201 833 ntBASIC22.57■■□□□ 1.2
USP47Q96K76 PTK7-212ENST00000476760 902 ntTSL 2 BASIC22.57■■□□□ 1.2
USP47Q96K76 NAA60-208ENST00000570819 833 ntTSL 2 BASIC22.57■■□□□ 1.2
USP47Q96K76 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC22.57■■□□□ 1.2
USP47Q96K76 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC22.57■■□□□ 1.2
USP47Q96K76 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC22.57■■□□□ 1.2
USP47Q96K76 RAB34-223ENST00000636154 730 ntTSL 2 BASIC22.57■■□□□ 1.2
USP47Q96K76 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC22.57■■□□□ 1.2
USP47Q96K76 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC22.57■■□□□ 1.2
USP47Q96K76 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC22.57■■□□□ 1.2
USP47Q96K76 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
USP47Q96K76 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC22.57■■□□□ 1.2
USP47Q96K76 LINC02199-201ENST00000506655 2702 ntBASIC22.57■■□□□ 1.2
USP47Q96K76 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
USP47Q96K76 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
USP47Q96K76 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC22.56■■□□□ 1.2
USP47Q96K76 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC22.56■■□□□ 1.2
USP47Q96K76 UGT1A2P-201ENST00000454886 866 ntBASIC22.56■■□□□ 1.2
USP47Q96K76 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC22.56■■□□□ 1.2
USP47Q96K76 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC22.56■■□□□ 1.2
USP47Q96K76 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC22.56■■□□□ 1.2
USP47Q96K76 EHF-205ENST00000527935 557 ntTSL 2 BASIC22.56■■□□□ 1.2
USP47Q96K76 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC22.56■■□□□ 1.2
USP47Q96K76 AC138761.1-201ENST00000584393 385 ntBASIC22.56■■□□□ 1.2
USP47Q96K76 SPIB-207ENST00000597855 564 ntTSL 4 BASIC22.56■■□□□ 1.2
USP47Q96K76 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 AC011477.6-201ENST00000604980 1927 ntBASIC22.56■■□□□ 1.2
USP47Q96K76 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 AC087499.5-201ENST00000452760 1342 ntBASIC22.56■■□□□ 1.2
USP47Q96K76 REXO1L1P-202ENST00000608646 1974 ntBASIC22.56■■□□□ 1.2
USP47Q96K76 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC22.56■■□□□ 1.2
USP47Q96K76 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
USP47Q96K76 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC22.55■■□□□ 1.2
USP47Q96K76 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC22.55■■□□□ 1.2
USP47Q96K76 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC22.55■■□□□ 1.2
USP47Q96K76 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC22.55■■□□□ 1.2
USP47Q96K76 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
USP47Q96K76 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC22.55■■□□□ 1.2
USP47Q96K76 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC22.55■■□□□ 1.2
USP47Q96K76 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
USP47Q96K76 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC22.55■■□□□ 1.2
USP47Q96K76 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC22.55■■□□□ 1.2
USP47Q96K76 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC22.55■■□□□ 1.2
USP47Q96K76 HNRNPUP1-201ENST00000554987 333 ntBASIC22.55■■□□□ 1.2
USP47Q96K76 MIR4745-201ENST00000577608 62 ntBASIC22.55■■□□□ 1.2
USP47Q96K76 INO80C-206ENST00000586489 594 ntTSL 3 BASIC22.55■■□□□ 1.2
USP47Q96K76 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC22.55■■□□□ 1.2
USP47Q96K76 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC22.55■■□□□ 1.2
USP47Q96K76 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC22.55■■□□□ 1.2
USP47Q96K76 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC22.55■■□□□ 1.2
USP47Q96K76 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP47Q96K76 LRRFIP1P1-201ENST00000498774 2246 ntBASIC22.55■■□□□ 1.2
USP47Q96K76 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP47Q96K76 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
USP47Q96K76 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP47Q96K76 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP47Q96K76 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP47Q96K76 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC22.54■■□□□ 1.2
USP47Q96K76 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
USP47Q96K76 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP47Q96K76 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC22.54■■□□□ 1.2
USP47Q96K76 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC22.54■■□□□ 1.2
USP47Q96K76 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP47Q96K76 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms