Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 BX842568.4-201ENST00000421222 227 ntBASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 KRT8P23-201ENST00000560090 1207 ntBASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 CDC14C-201ENST00000428251 1719 ntBASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC65Q8IXS2 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 HAUS4P1-201ENST00000406739 1145 ntBASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 AC142381.1-201ENST00000426099 345 ntBASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 LINC01225-203ENST00000563550 1244 ntBASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 AP000842.3-202ENST00000569238 1080 ntBASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 AC024267.1-201ENST00000582320 895 ntBASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 LINC02447-202ENST00000501888 2146 ntBASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC65Q8IXS2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 AC069224.1-201ENST00000566372 1715 ntBASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 MIR346-201ENST00000362234 95 ntBASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 AL592309.1-201ENST00000443127 649 ntBASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 YBX1P5-201ENST00000509441 847 ntBASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC65Q8IXS2 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms