Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AL662890.1-201ENST00000396818 632 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AC016694.1-201ENST00000434179 700 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 NKAIN1P1-201ENST00000435754 582 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AC012441.1-201ENST00000446669 685 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 METTL26-214ENST00000614890 801 ntTSL 3 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AL096828.3-201ENST00000615354 462 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 RPL17P11-201ENST00000417593 544 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 Z93015.1-201ENST00000451718 390 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AC026410.3-201ENST00000514280 936 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 AC018695.7-201ENST00000624587 2492 ntBASIC11.1□□□□□ -0.63
CSMD3Q7Z407 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CSMD3Q7Z407 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 SLC25A24P2-201ENST00000415059 510 ntBASIC11.09□□□□□ -0.63
CSMD3Q7Z407 NUS1P3-201ENST00000423502 862 ntBASIC11.09□□□□□ -0.63
CSMD3Q7Z407 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AZGP1P1-201ENST00000411909 902 ntBASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 EIF4HP1-201ENST00000453115 687 ntBASIC11.09□□□□□ -0.63
CSMD3Q7Z407 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AL022328.3-201ENST00000607943 679 ntBASIC11.09□□□□□ -0.63
CSMD3Q7Z407 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 AP001505.2-201ENST00000616815 443 ntBASIC11.09□□□□□ -0.63
CSMD3Q7Z407 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
CSMD3Q7Z407 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms