Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AF238378.1-201ENST00000526806 358 ntBASIC12.53□□□□□ -0.4
HIST1H1AQ02539 OR7E14P-202ENST00000530490 1290 ntBASIC12.53□□□□□ -0.4
HIST1H1AQ02539 MPDU1-223ENST00000582151 728 ntBASIC12.53□□□□□ -0.4
HIST1H1AQ02539 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 MIR1199-201ENST00000621445 119 ntBASIC12.53□□□□□ -0.4
HIST1H1AQ02539 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HIST1H1AQ02539 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 OR2I1P-209ENST00000641730 5365 ntBASIC12.52□□□□□ -0.4
HIST1H1AQ02539 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 AC104581.4-201ENST00000623126 3052 ntBASIC12.52□□□□□ -0.4
HIST1H1AQ02539 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HIST1H1AQ02539 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 RPS2P1-201ENST00000434010 821 ntBASIC12.52□□□□□ -0.41
HIST1H1AQ02539 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 KRT18P56-201ENST00000507275 550 ntBASIC12.52□□□□□ -0.41
HIST1H1AQ02539 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 PAM16-208ENST00000573553 722 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AC091167.2-201ENST00000579581 588 ntBASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AP001350.2-201ENST00000625104 1094 ntBASIC12.52□□□□□ -0.41
HIST1H1AQ02539 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AC107918.4-202ENST00000641623 219 ntBASIC12.52□□□□□ -0.41
HIST1H1AQ02539 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AL671710.1-201ENST00000610245 2349 ntBASIC12.52□□□□□ -0.41
HIST1H1AQ02539 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
HIST1H1AQ02539 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HIST1H1AQ02539 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.51□□□□□ -0.41
HIST1H1AQ02539 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms