Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCNA1P78396 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCNA1P78396 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.33■□□□□ 0.52
CCNA1P78396 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CCNA1P78396 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.33■□□□□ 0.52
CCNA1P78396 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.33■□□□□ 0.52
CCNA1P78396 ACTG1P3-201ENST00000431775 1114 ntBASIC18.33■□□□□ 0.52
CCNA1P78396 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.33■□□□□ 0.52
CCNA1P78396 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.33■□□□□ 0.52
CCNA1P78396 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.33■□□□□ 0.52
CCNA1P78396 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.33■□□□□ 0.52
CCNA1P78396 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.33■□□□□ 0.52
CCNA1P78396 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
CCNA1P78396 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CCNA1P78396 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.33■□□□□ 0.52
CCNA1P78396 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.33■□□□□ 0.52
CCNA1P78396 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.33■□□□□ 0.52
CCNA1P78396 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.33■□□□□ 0.52
CCNA1P78396 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CCNA1P78396 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCNA1P78396 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.32■□□□□ 0.52
CCNA1P78396 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.32■□□□□ 0.52
CCNA1P78396 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCNA1P78396 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 AZGP1P1-201ENST00000411909 902 ntBASIC18.32■□□□□ 0.52
CCNA1P78396 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.32■□□□□ 0.52
CCNA1P78396 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.32■□□□□ 0.52
CCNA1P78396 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.32■□□□□ 0.52
CCNA1P78396 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCNA1P78396 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.32■□□□□ 0.52
CCNA1P78396 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CCNA1P78396 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.32■□□□□ 0.52
CCNA1P78396 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.32■□□□□ 0.52
CCNA1P78396 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.32■□□□□ 0.52
CCNA1P78396 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 AL022328.1-201ENST00000610050 478 ntBASIC18.32■□□□□ 0.52
CCNA1P78396 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.32■□□□□ 0.52
CCNA1P78396 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 REXO1L6P-201ENST00000603433 1515 ntBASIC18.32■□□□□ 0.52
CCNA1P78396 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.32■□□□□ 0.52
CCNA1P78396 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
CCNA1P78396 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCNA1P78396 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.32■□□□□ 0.52
CCNA1P78396 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.32■□□□□ 0.52
CCNA1P78396 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCNA1P78396 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
CCNA1P78396 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCNA1P78396 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.31■□□□□ 0.52
CCNA1P78396 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.31■□□□□ 0.52
CCNA1P78396 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
CCNA1P78396 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.31■□□□□ 0.52
CCNA1P78396 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
CCNA1P78396 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.31■□□□□ 0.52
CCNA1P78396 KLF2P4-201ENST00000451959 1225 ntBASIC18.31■□□□□ 0.52
CCNA1P78396 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CCNA1P78396 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.31■□□□□ 0.52
CCNA1P78396 FAM86LP-201ENST00000478302 853 ntBASIC18.31■□□□□ 0.52
CCNA1P78396 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CCNA1P78396 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.31■□□□□ 0.52
CCNA1P78396 RPSAP52-203ENST00000622976 1023 ntBASIC18.31■□□□□ 0.52
CCNA1P78396 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CCNA1P78396 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CCNA1P78396 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.31■□□□□ 0.52
CCNA1P78396 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCNA1P78396 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms