Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.04■□□□□ -0
RNF4P78317 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.04■□□□□ -0
RNF4P78317 AC069120.2-201ENST00000524091 540 ntBASIC15.04■□□□□ -0
RNF4P78317 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 AC105021.1-202ENST00000570572 669 ntBASIC15.04■□□□□ -0
RNF4P78317 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.04■□□□□ -0
RNF4P78317 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.04■□□□□ -0
RNF4P78317 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.04■□□□□ -0
RNF4P78317 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
RNF4P78317 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.04■□□□□ -0
RNF4P78317 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.04■□□□□ -0
RNF4P78317 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.03■□□□□ -0
RNF4P78317 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
RNF4P78317 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
RNF4P78317 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.03■□□□□ -0
RNF4P78317 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.03■□□□□ -0
RNF4P78317 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.03■□□□□ -0
RNF4P78317 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.03■□□□□ -0
RNF4P78317 MIR943-201ENST00000401286 94 ntBASIC15.03■□□□□ -0
RNF4P78317 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.03■□□□□ -0
RNF4P78317 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.03■□□□□ -0
RNF4P78317 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.03■□□□□ -0
RNF4P78317 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.03■□□□□ -0
RNF4P78317 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.03■□□□□ -0
RNF4P78317 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
RNF4P78317 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 AC092364.2-201ENST00000596710 2692 ntBASIC15.03■□□□□ -0
RNF4P78317 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 AC084018.2-201ENST00000613093 2607 ntBASIC15.03■□□□□ -0
RNF4P78317 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.03■□□□□ -0
RNF4P78317 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.03■□□□□ -0
RNF4P78317 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.03■□□□□ -0
RNF4P78317 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 AL662844.4-201ENST00000606367 2838 ntBASIC15.02■□□□□ -0
RNF4P78317 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
RNF4P78317 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.02■□□□□ -0
RNF4P78317 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.02■□□□□ -0
RNF4P78317 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.02■□□□□ -0
RNF4P78317 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.02■□□□□ -0
RNF4P78317 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.02■□□□□ -0
RNF4P78317 BANF1P1-201ENST00000553684 263 ntBASIC15.02■□□□□ -0
RNF4P78317 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.02■□□□□ -0
RNF4P78317 AL355385.1-201ENST00000606123 409 ntBASIC15.02■□□□□ -0
RNF4P78317 AC026979.3-201ENST00000607315 403 ntBASIC15.02■□□□□ -0
RNF4P78317 RN7SL828P-201ENST00000607615 303 ntBASIC15.02■□□□□ -0
RNF4P78317 AC006449.6-201ENST00000612330 2296 ntBASIC15.02□□□□□ -0.01
RNF4P78317 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms