Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CLRN1P58418 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 AC093724.1-201ENST00000448659 1027 ntBASIC14.56□□□□□ -0.08
CLRN1P58418 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.56□□□□□ -0.08
CLRN1P58418 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 AC002347.1-201ENST00000569543 541 ntBASIC14.56□□□□□ -0.08
CLRN1P58418 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
CLRN1P58418 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.56□□□□□ -0.08
CLRN1P58418 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CLRN1P58418 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.56□□□□□ -0.08
CLRN1P58418 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.56□□□□□ -0.08
CLRN1P58418 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 LINC02199-201ENST00000506655 2702 ntBASIC14.56□□□□□ -0.08
CLRN1P58418 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
CLRN1P58418 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
CLRN1P58418 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 AC073439.1-201ENST00000624121 1774 ntBASIC14.55□□□□□ -0.08
CLRN1P58418 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.55□□□□□ -0.08
CLRN1P58418 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 POLD2P1-201ENST00000511220 997 ntBASIC14.55□□□□□ -0.08
CLRN1P58418 PRYP6-201ENST00000514804 343 ntBASIC14.55□□□□□ -0.08
CLRN1P58418 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.55□□□□□ -0.08
CLRN1P58418 RARRES2P8-201ENST00000566335 367 ntBASIC14.55□□□□□ -0.08
CLRN1P58418 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 AC091812.2-201ENST00000619081 385 ntBASIC14.55□□□□□ -0.08
CLRN1P58418 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.55□□□□□ -0.08
CLRN1P58418 PMS2P7-201ENST00000506558 1336 ntBASIC14.55□□□□□ -0.08
CLRN1P58418 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN1P58418 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CLRN1P58418 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CLRN1P58418 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN1P58418 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.54□□□□□ -0.08
CLRN1P58418 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
CLRN1P58418 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN1P58418 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms