Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SOX3P41225 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 AC079140.1-201ENST00000508039 487 ntBASIC15.35■□□□□ 0.05
SOX3P41225 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.35■□□□□ 0.05
SOX3P41225 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.35■□□□□ 0.05
SOX3P41225 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 AC021097.1-201ENST00000607902 574 ntBASIC15.35■□□□□ 0.05
SOX3P41225 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.35■□□□□ 0.05
SOX3P41225 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.35■□□□□ 0.05
SOX3P41225 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SOX3P41225 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.35■□□□□ 0.05
SOX3P41225 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 AC016027.1-202ENST00000607927 1699 ntBASIC15.35■□□□□ 0.05
SOX3P41225 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SOX3P41225 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SOX3P41225 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.35■□□□□ 0.05
SOX3P41225 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 AC144831.1-201ENST00000573312 2656 ntBASIC15.34■□□□□ 0.05
SOX3P41225 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.34■□□□□ 0.05
SOX3P41225 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.34■□□□□ 0.05
SOX3P41225 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 METTL21AP1-201ENST00000438852 635 ntBASIC15.34■□□□□ 0.05
SOX3P41225 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 AC243562.1-201ENST00000560672 389 ntBASIC15.34■□□□□ 0.05
SOX3P41225 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.34■□□□□ 0.05
SOX3P41225 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 KRT18P28-201ENST00000453838 1332 ntBASIC15.34■□□□□ 0.05
SOX3P41225 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.34■□□□□ 0.05
SOX3P41225 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.34■□□□□ 0.05
SOX3P41225 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SOX3P41225 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SOX3P41225 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SOX3P41225 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.33■□□□□ 0.05
SOX3P41225 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.33■□□□□ 0.05
SOX3P41225 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SOX3P41225 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SOX3P41225 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.33■□□□□ 0.05
SOX3P41225 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.33■□□□□ 0.05
SOX3P41225 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
SOX3P41225 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SOX3P41225 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SOX3P41225 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
SOX3P41225 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.33■□□□□ 0.05
SOX3P41225 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
SOX3P41225 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms