Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 RPL18-209ENST00000550645 463 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 RPL18-214ENST00000552588 559 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 AC106730.1-201ENST00000566722 1090 ntBASIC12.45□□□□□ -0.42
HLA-DMBP28068 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 RPS15-207ENST00000591032 550 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 RPS15-212ENST00000593052 629 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ACTL9-202ENST00000612068 1252 ntBASIC12.45□□□□□ -0.42
HLA-DMBP28068 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.45□□□□□ -0.42
HLA-DMBP28068 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 AC104109.2-201ENST00000602919 1418 ntBASIC12.45□□□□□ -0.42
HLA-DMBP28068 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
HLA-DMBP28068 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HLA-DMBP28068 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 AC020765.3-201ENST00000613051 740 ntBASIC12.44□□□□□ -0.42
HLA-DMBP28068 AC117500.6-201ENST00000624871 588 ntBASIC12.44□□□□□ -0.42
HLA-DMBP28068 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HLA-DMBP28068 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HLA-DMBP28068 AC112504.1-201ENST00000623415 1841 ntBASIC12.44□□□□□ -0.42
HLA-DMBP28068 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms