Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
BDNFP23560 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
BDNFP23560 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
BDNFP23560 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
BDNFP23560 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.08■□□□□ 0.33
BDNFP23560 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
BDNFP23560 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BDNFP23560 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.08■□□□□ 0.33
BDNFP23560 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.08■□□□□ 0.32
BDNFP23560 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.08■□□□□ 0.32
BDNFP23560 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.08■□□□□ 0.32
BDNFP23560 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.08■□□□□ 0.32
BDNFP23560 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 AC087499.5-201ENST00000452760 1342 ntBASIC17.08■□□□□ 0.32
BDNFP23560 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.08■□□□□ 0.32
BDNFP23560 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 MIR661-201ENST00000384842 89 ntBASIC17.08■□□□□ 0.32
BDNFP23560 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.08■□□□□ 0.32
BDNFP23560 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.08■□□□□ 0.32
BDNFP23560 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.08■□□□□ 0.32
BDNFP23560 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.08■□□□□ 0.32
BDNFP23560 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.08■□□□□ 0.32
BDNFP23560 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.08■□□□□ 0.32
BDNFP23560 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.08■□□□□ 0.32
BDNFP23560 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
BDNFP23560 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.08■□□□□ 0.32
BDNFP23560 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
BDNFP23560 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
BDNFP23560 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.07■□□□□ 0.32
BDNFP23560 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.07■□□□□ 0.32
BDNFP23560 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 AC022144.1-201ENST00000602255 1580 ntBASIC17.07■□□□□ 0.32
BDNFP23560 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.07■□□□□ 0.32
BDNFP23560 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.07■□□□□ 0.32
BDNFP23560 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
BDNFP23560 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.07■□□□□ 0.32
BDNFP23560 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.07■□□□□ 0.32
BDNFP23560 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 AC236430.1-201ENST00000402231 743 ntBASIC17.07■□□□□ 0.32
BDNFP23560 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.07■□□□□ 0.32
BDNFP23560 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.07■□□□□ 0.32
BDNFP23560 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.07■□□□□ 0.32
BDNFP23560 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.07■□□□□ 0.32
BDNFP23560 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.07■□□□□ 0.32
BDNFP23560 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.07■□□□□ 0.32
BDNFP23560 AL844908.2-201ENST00000609461 460 ntBASIC17.07■□□□□ 0.32
BDNFP23560 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.07■□□□□ 0.32
BDNFP23560 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.07■□□□□ 0.32
BDNFP23560 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
BDNFP23560 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.07■□□□□ 0.32
BDNFP23560 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.07■□□□□ 0.32
BDNFP23560 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BDNFP23560 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
BDNFP23560 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.07■□□□□ 0.32
BDNFP23560 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
BDNFP23560 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
BDNFP23560 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.06■□□□□ 0.32
BDNFP23560 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BDNFP23560 KRT8P12-202ENST00000472924 1397 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms