Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC9.9□□□□□ -0.82
APOBP04114 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC9.9□□□□□ -0.82
APOBP04114 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC9.9□□□□□ -0.82
APOBP04114 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
APOBP04114 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC9.9□□□□□ -0.82
APOBP04114 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 PCGF3-213ENST00000620529 1899 ntBASIC9.9□□□□□ -0.82
APOBP04114 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 AC093433.1-201ENST00000458048 571 ntBASIC9.9□□□□□ -0.82
APOBP04114 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC9.9□□□□□ -0.82
APOBP04114 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 NEFHP1-201ENST00000412845 2629 ntBASIC9.9□□□□□ -0.82
APOBP04114 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
APOBP04114 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 RAC2-202ENST00000401529 569 ntTSL 4 BASIC9.9□□□□□ -0.82
APOBP04114 CD8B2-202ENST00000417670 633 ntBASIC9.9□□□□□ -0.82
APOBP04114 RPL13AP19-201ENST00000434320 584 ntBASIC9.9□□□□□ -0.82
APOBP04114 KRT18P66-201ENST00000452970 1269 ntBASIC9.9□□□□□ -0.82
APOBP04114 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC9.9□□□□□ -0.82
APOBP04114 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC9.9□□□□□ -0.82
APOBP04114 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
APOBP04114 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC9.9□□□□□ -0.82
APOBP04114 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC9.9□□□□□ -0.82
APOBP04114 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
APOBP04114 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC9.9□□□□□ -0.83
APOBP04114 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
APOBP04114 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
APOBP04114 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC9.9□□□□□ -0.83
APOBP04114 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC9.9□□□□□ -0.83
APOBP04114 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC9.9□□□□□ -0.83
APOBP04114 AC245884.6-201ENST00000515672 1067 ntBASIC9.9□□□□□ -0.83
APOBP04114 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC9.9□□□□□ -0.83
APOBP04114 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC9.9□□□□□ -0.83
APOBP04114 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
APOBP04114 AC138649.2-201ENST00000615886 705 ntBASIC9.9□□□□□ -0.83
APOBP04114 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
APOBP04114 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.83
APOBP04114 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC9.9□□□□□ -0.83
APOBP04114 AC005622.1-201ENST00000636801 1703 ntBASIC9.9□□□□□ -0.83
APOBP04114 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.83
APOBP04114 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC9.9□□□□□ -0.83
APOBP04114 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 AC114501.1-201ENST00000445949 172 ntBASIC9.89□□□□□ -0.83
APOBP04114 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 CFL1-206ENST00000527344 962 ntTSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 FOS-204ENST00000554617 796 ntTSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 GRN-214ENST00000589265 1632 ntTSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 GGT3P-204ENST00000453783 1664 ntBASIC9.89□□□□□ -0.83
APOBP04114 AL390961.4-201ENST00000623958 2535 ntBASIC9.89□□□□□ -0.83
APOBP04114 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 PFN2-202ENST00000423691 911 ntTSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 FTLP10-202ENST00000505798 471 ntBASIC9.89□□□□□ -0.83
APOBP04114 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 CSH2-206ENST00000560142 749 ntTSL 5 BASIC9.89□□□□□ -0.83
APOBP04114 AC097359.3-201ENST00000603982 1210 ntBASIC9.89□□□□□ -0.83
APOBP04114 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC9.89□□□□□ -0.83
APOBP04114 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC9.89□□□□□ -0.83
APOBP04114 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
APOBP04114 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms