Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
PRKNO60260 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
PRKNO60260 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.12■□□□□ 0.01
PRKNO60260 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PRKNO60260 SPDYE7P-202ENST00000420373 878 ntBASIC15.12■□□□□ 0.01
PRKNO60260 KLF2P3-201ENST00000451977 1087 ntBASIC15.12■□□□□ 0.01
PRKNO60260 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.12■□□□□ 0.01
PRKNO60260 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
PRKNO60260 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 AC003101.2-201ENST00000612557 442 ntBASIC15.12■□□□□ 0.01
PRKNO60260 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 TNRC18P3-201ENST00000441896 2691 ntBASIC15.12■□□□□ 0.01
PRKNO60260 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.12■□□□□ 0.01
PRKNO60260 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 U82695.1-201ENST00000635752 1889 ntBASIC15.12■□□□□ 0.01
PRKNO60260 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PRKNO60260 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PRKNO60260 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PRKNO60260 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.11■□□□□ 0.01
PRKNO60260 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.11■□□□□ 0.01
PRKNO60260 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.11■□□□□ 0.01
PRKNO60260 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
PRKNO60260 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.11■□□□□ 0.01
PRKNO60260 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PRKNO60260 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.11■□□□□ 0.01
PRKNO60260 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.11■□□□□ 0.01
PRKNO60260 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.11■□□□□ 0.01
PRKNO60260 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.11■□□□□ 0.01
PRKNO60260 AC125807.1-201ENST00000483097 614 ntBASIC15.11■□□□□ 0.01
PRKNO60260 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.11■□□□□ 0.01
PRKNO60260 AC005498.2-205ENST00000593218 784 ntBASIC15.11■□□□□ 0.01
PRKNO60260 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.11■□□□□ 0.01
PRKNO60260 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PRKNO60260 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PRKNO60260 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.11■□□□□ 0.01
PRKNO60260 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.1■□□□□ 0.01
PRKNO60260 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PRKNO60260 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.1■□□□□ 0.01
PRKNO60260 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.1■□□□□ 0.01
PRKNO60260 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKNO60260 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PRKNO60260 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PRKNO60260 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PRKNO60260 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.1■□□□□ 0.01
PRKNO60260 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.1■□□□□ 0.01
PRKNO60260 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
PRKNO60260 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms