Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SGCEO43556 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SGCEO43556 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
SGCEO43556 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SGCEO43556 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 KRT18P3-201ENST00000451602 1288 ntBASIC14.46□□□□□ -0.09
SGCEO43556 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.46□□□□□ -0.09
SGCEO43556 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.46□□□□□ -0.09
SGCEO43556 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.46□□□□□ -0.09
SGCEO43556 AC109635.5-201ENST00000533593 962 ntBASIC14.46□□□□□ -0.09
SGCEO43556 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
SGCEO43556 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.46□□□□□ -0.09
SGCEO43556 AL009183.1-201ENST00000603760 355 ntBASIC14.46□□□□□ -0.09
SGCEO43556 AC140113.2-201ENST00000604370 208 ntBASIC14.46□□□□□ -0.09
SGCEO43556 FAM197Y3-203ENST00000618346 717 ntBASIC14.46□□□□□ -0.09
SGCEO43556 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
SGCEO43556 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.46□□□□□ -0.09
SGCEO43556 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.46□□□□□ -0.09
SGCEO43556 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
SGCEO43556 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.46□□□□□ -0.09
SGCEO43556 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SGCEO43556 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.46□□□□□ -0.09
SGCEO43556 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.46□□□□□ -0.1
SGCEO43556 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SGCEO43556 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SGCEO43556 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
SGCEO43556 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
SGCEO43556 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.46□□□□□ -0.1
SGCEO43556 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
SGCEO43556 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.46□□□□□ -0.1
SGCEO43556 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SGCEO43556 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SGCEO43556 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
SGCEO43556 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SGCEO43556 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SGCEO43556 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
SGCEO43556 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.45□□□□□ -0.1
SGCEO43556 AC140658.5-201ENST00000438532 169 ntBASIC14.45□□□□□ -0.1
SGCEO43556 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
SGCEO43556 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.45□□□□□ -0.1
SGCEO43556 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.45□□□□□ -0.1
SGCEO43556 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.45□□□□□ -0.1
SGCEO43556 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.45□□□□□ -0.1
SGCEO43556 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.45□□□□□ -0.1
SGCEO43556 MTHFR-217ENST00000641820 1569 ntBASIC14.45□□□□□ -0.1
SGCEO43556 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
SGCEO43556 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.45□□□□□ -0.1
SGCEO43556 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SGCEO43556 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms