Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
DDX39AO00148 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
DDX39AO00148 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
DDX39AO00148 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
DDX39AO00148 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
DDX39AO00148 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
DDX39AO00148 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
DDX39AO00148 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX39AO00148 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 AL592424.1-201ENST00000563624 1536 ntBASIC18.25■□□□□ 0.51
DDX39AO00148 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.25■□□□□ 0.51
DDX39AO00148 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX39AO00148 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.25■□□□□ 0.51
DDX39AO00148 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
DDX39AO00148 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.25■□□□□ 0.51
DDX39AO00148 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX39AO00148 AL079307.3-201ENST00000556114 283 ntBASIC18.25■□□□□ 0.51
DDX39AO00148 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.25■□□□□ 0.51
DDX39AO00148 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX39AO00148 LINC02084-201ENST00000606069 1096 ntBASIC18.25■□□□□ 0.51
DDX39AO00148 TEX28P1-201ENST00000613479 1221 ntBASIC18.25■□□□□ 0.51
DDX39AO00148 TEX28P2-201ENST00000617764 1221 ntBASIC18.25■□□□□ 0.51
DDX39AO00148 AJ011932.1-201ENST00000621707 465 ntBASIC18.25■□□□□ 0.51
DDX39AO00148 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.25■□□□□ 0.51
DDX39AO00148 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.25■□□□□ 0.51
DDX39AO00148 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX39AO00148 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
DDX39AO00148 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX39AO00148 AC020916.1-201ENST00000587762 1774 ntBASIC18.25■□□□□ 0.51
DDX39AO00148 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
DDX39AO00148 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
DDX39AO00148 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.24■□□□□ 0.51
DDX39AO00148 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 HLA-V-204ENST00000476601 1289 ntBASIC18.24■□□□□ 0.51
DDX39AO00148 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.24■□□□□ 0.51
DDX39AO00148 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.24■□□□□ 0.51
DDX39AO00148 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 MIR4321-201ENST00000592276 80 ntBASIC18.24■□□□□ 0.51
DDX39AO00148 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
DDX39AO00148 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
DDX39AO00148 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.24■□□□□ 0.51
DDX39AO00148 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.24■□□□□ 0.51
DDX39AO00148 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
DDX39AO00148 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX39AO00148 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
DDX39AO00148 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.23■□□□□ 0.51
DDX39AO00148 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX39AO00148 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.23■□□□□ 0.51
DDX39AO00148 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.23■□□□□ 0.51
DDX39AO00148 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX39AO00148 AC084018.2-201ENST00000613093 2607 ntBASIC18.23■□□□□ 0.51
DDX39AO00148 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX39AO00148 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX39AO00148 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
DDX39AO00148 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.23■□□□□ 0.51
DDX39AO00148 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
DDX39AO00148 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
DDX39AO00148 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms