Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 AC064836.3-201ENST00000607928 673 ntBASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 AC025580.3-201ENST00000617932 1424 ntBASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 AP005117.1-202ENST00000581724 1908 ntBASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 PAUPAR-201ENST00000630360 2965 ntBASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HIF3AQ9Y2N7 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 BCAR1-209ENST00000546196 1340 ntBASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AC132872.4-202ENST00000622924 2756 ntBASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AC004877.2-201ENST00000623941 599 ntBASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 AC008677.1-201ENST00000519230 1561 ntBASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HIF3AQ9Y2N7 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HIF3AQ9Y2N7 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.71□□□□□ -0.06
HIF3AQ9Y2N7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.71□□□□□ -0.06
HIF3AQ9Y2N7 AC016027.1-202ENST00000607927 1699 ntBASIC14.71□□□□□ -0.06
HIF3AQ9Y2N7 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HIF3AQ9Y2N7 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms