Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF541Q9H0D2 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 EIF4HP1-201ENST00000453115 687 ntBASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 AC022137.2-201ENST00000503482 481 ntBASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 AC244452.3-201ENST00000636814 210 ntBASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 AC020763.4-201ENST00000623414 4170 ntBASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF541Q9H0D2 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 AL603756.1-201ENST00000606511 2163 ntBASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 FAM197Y7-201ENST00000432892 766 ntBASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 AC025279.2-201ENST00000569730 653 ntBASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
ZNF541Q9H0D2 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 SCARNA20.5-201ENST00000516991 142 ntBASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 AC078819.1-201ENST00000547454 765 ntBASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 AC012085.1-201ENST00000548270 765 ntBASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 AP006547.1-201ENST00000563435 692 ntBASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF541Q9H0D2 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 AC138028.6-201ENST00000616106 1482 ntBASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms