Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 RNU1-129P-201ENST00000384064 167 ntBASIC12.25□□□□□ -0.45
LINC00477Q96M19 AC108073.2-201ENST00000464002 357 ntBASIC12.25□□□□□ -0.45
LINC00477Q96M19 CXCL1P1-201ENST00000502804 216 ntBASIC12.25□□□□□ -0.45
LINC00477Q96M19 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 U1.21-201ENST00000580816 167 ntBASIC12.25□□□□□ -0.45
LINC00477Q96M19 CYB561-216ENST00000582297 897 ntTSL 3 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 METTL23-204ENST00000586752 904 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 PCDHA3-202ENST00000532566 4594 ntBASIC12.25□□□□□ -0.45
LINC00477Q96M19 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.25□□□□□ -0.45
LINC00477Q96M19 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
LINC00477Q96M19 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 AL161772.1-201ENST00000610494 4412 ntBASIC12.24□□□□□ -0.45
LINC00477Q96M19 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 AL031055.1-201ENST00000606362 631 ntBASIC12.24□□□□□ -0.45
LINC00477Q96M19 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC12.24□□□□□ -0.45
LINC00477Q96M19 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
LINC00477Q96M19 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
LINC00477Q96M19 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 OR2I1P-209ENST00000641730 5365 ntBASIC12.23□□□□□ -0.45
LINC00477Q96M19 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.23□□□□□ -0.45
LINC00477Q96M19 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms