Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 LINC01144-201ENST00000626198 1710 ntBASIC16.46■□□□□ 0.23
CHFRQ96EP1 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 TTTY23B-201ENST00000442790 549 ntBASIC16.46■□□□□ 0.23
CHFRQ96EP1 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHFRQ96EP1 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CHFRQ96EP1 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.46■□□□□ 0.22
CHFRQ96EP1 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.46■□□□□ 0.22
CHFRQ96EP1 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 FO393414.2-201ENST00000405153 598 ntBASIC16.45■□□□□ 0.22
CHFRQ96EP1 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 RPS2P32-201ENST00000439199 892 ntBASIC16.45■□□□□ 0.22
CHFRQ96EP1 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 RAB43P1-201ENST00000561790 589 ntBASIC16.45■□□□□ 0.22
CHFRQ96EP1 AL512343.1-201ENST00000605837 169 ntBASIC16.45■□□□□ 0.22
CHFRQ96EP1 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 HLA-A-202ENST00000376806 1854 ntBASIC16.45■□□□□ 0.22
CHFRQ96EP1 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.45■□□□□ 0.22
CHFRQ96EP1 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHFRQ96EP1 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHFRQ96EP1 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHFRQ96EP1 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHFRQ96EP1 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 MIR658-201ENST00000385210 100 ntBASIC16.44■□□□□ 0.22
CHFRQ96EP1 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHFRQ96EP1 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHFRQ96EP1 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.44■□□□□ 0.22
CHFRQ96EP1 SNX29P1-201ENST00000548357 1007 ntBASIC16.44■□□□□ 0.22
CHFRQ96EP1 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms